2012
Bataille, A.R.*, Jeronimo, C.*, Jacques, P.E., Laramée, L., Fortin, M.-È., Forest, A., Bergeron, M., Hanes, S.D. and Robert, F. (2012) A Universal RNA Polymerase II CTD Cycle Is Orchestrated by Complex Interplays between Kinase, Phosphatase, and Isomerase Enzymes along Genes. Mol. Cell, 45:158-170.
2011
Poschmann, J., Drouin, S., Jacques, P.E., El Fadili, K., Newmarch, M., Robert, F., Ramotar, D. (2011) The Peptidyl Prolyl Isomerase Rrd1 Regulates the Elongation of RNA Polymerase II during Transcriptional Stresses. PLoS One, 6(8):e23159.
Gonsalves, S.E., Moses, A.M., Razak, Z., Robert, F., Westwood, J.T. (2011) Whole-Genome analysis reveals that active heat shock factor binding sites are mostly associated with non-heat shock genes in Drosophila melanogaster. PLoS One, 6(1):e15934.
Ivanovska, I., Jacques, P.É., Rando, O.J., Robert, F., Winston, F. (2011) Control of chromatin structure by spt6: different consequences in coding and regulatory regions. Mol Cell Biol, 31(3):531-541.
2010
Drouin, S., Laramée, L.*, Jacques, P.E.*, Forest, A., Bergeron, M., Robert, F. (2010) DSIF and RNA polymerase II CTD phosphorylation coordinate the recruitment of Rpd3S to actively transcribed genes. PLoS Genet, 6(10):e1001173, 1-12.
Hardy, S., Robert, F. (2010) Random deposition of histone variants: A cellular mistake or a novel regulatory mechanism? Epigenetics. 5(5).
2009Szilard, R.K.*, Jacques, P.E.*, Laramée, L., Cheng, B., Galicia, S., Bataille, A.R., Yeung, M., Mendez, M., Bergeron, M., Robert, F$. and Durocher, D$. (2009) Systematic identification of fragile sites via genome-wide location analysis of gamma-H2AX. Nat Struct Mol Biol. 17(3):299-305.Hardy, S.*, Jacques, P.-E.*, Gévry, N., Forest, A., Fortin, M.-È., Laflamme, L., Gaudreau, L. and Robert, F. (2009) The Euchromatic and Heterochromatic Landscapes Are Shaped by Antagonizing Effects of Transcription on H2A.Z Deposition. PLoS Genetics 5(10), e1000687.Ghazal, G., Gagnon, J., Jacques, P.-E., Landry, J.-R., Robert, F. and Abou Elele, S. (2009) Yeast RNase III Triggers Polyadenylation-Independent Transcription Termination. Mol. Cell 36, 99-109.Turcotte, B., Liang, X.B., Robert, F. and Soontorngun, N. (2009) Transcriptional regulation of nonfermentable carbon utilization in budding yeast. FEMS Yeast Res. Epub ahead of print.Gévry, N., Hardy, S., Jacques, P.E., Laflamme, L., Svotelis, A., Robert, F., Gaudreau, L. (2009) Histone H2A.Z is essential for estrogen receptor signaling. Genes Dev 23:1522-1533.Bataille, A.R. and Robert, F. (2009) Profiling genome-wide histone modifications and variants by ChIP-chip on tiling microarrays in S. cerevisiae. Methods Mol Biol 543, 267-279.
2008Znaidi, S., Weber, S., Osman Zin Al-Abdin, O.Z., Bomme, P., Saidane, S., Drouin, S., Lemieux, S., De Deken, X., Robert, F. and Raymond, M. (2008) Genomewide Location Analysis of Candida albicans Upc2p, a Regulator of Sterol Metabolism and Azole Drug Resistance. Eukaryot Cell 7(5), 836-47.Truscott, M., Harada, R., Vadnais, C., Robert, F. and Nepveu, A. (2008) p110 CUX1 Cooperates with E2F Transcription Factors in the Transcriptional Activation of Cell Cycle-Regulated Genes. Mol. Cell. Biol. 28(10), 3127-38.
2007Harada, R., Vadnais, C., Sansregret, L., Leduy, L., Bérubé, G., Robert, F. and Nepveu, A. (2007) Genome-Wide Location Analysis and Expression Studies Reveal a Role for p110 CUX1 in the Activation of DNA Replication Genes. Nucleic Acids Res. 36(1), 189-202.
Soontorngun, N., Larochelle, M., Drouin, S., Robert, F. and Turcotte, B. (2007) Regulation of gluconeogenesis in Saccharomyces cerevisiae is mediated by activator and repressor functions of Rds2. Mol. Cell. Biol. 27(22), 7895-7905.Rufiange, A.*, Jacques, P-E.*, Bhat, W., Robert, F. and Nourani, A. (2007) Genome-Wide Replication-Independent Histone H3 Exchange Occurs Predominantly at Promoters and Implicates H3 K56 Acetylation and Asf1. Mol. Cell 27, 393-405.Sonoda, J., Laganière, J., Mehl, I.R., Barish, G.D., Chong, L-W., Li, X., Scheffler, I.E., Mock, D.C., Bataille, A.R., Robert, F., Lee, C-H., Giguère, V., Evans, R.M. (2007) Nuclear receptor ERalpha and coactivator PGC1-beta are effectors of IFN-gamma-induced host defence. Genes Dev. 21, 1909-1920.Ferretti, V.*, Poitras, C*., Bergeron, D., Coulombe, B., Robert, F. and Blanchette, M. (2007) PReMod: A Database of genome-wide mammalian cis-regulatory module predictions. Nucleic Acids Res. 35(Database issue):D122-6.
2006Larochelle, M.*, Drouin, S*., Robert, F. and Turcotte, B. (2006) Oxidative Stress-Activated Zinc Cluster Protein Stb5 Has Dual Activator/Repressor Functions Required for Pentose Phosphate Pathway Regulation and NADPH Production. Mol. Cell. Biol. 26(17), 6690-6701.
Blanchette, M$., Bataille, A.R., Chen, X., Poitras, C., Laganière, J., Lefèbvre, C., Deblois, G., Giguère, V., Ferretti, V., Bergeron, D., Coulombe, B. and Robert, F$. (2006) Genome-wide Computational Prediction of Transcriptional Regulatory Modules Reveals New Insights into Human Gene Expression. Genome Research 16, 656-668. PReMod (Base de données)Nourani, A., Robert, F. and Winston, F. (2006) Evidence that Spt2/Sin1, an HMG-like Factor, Plays Roles in Transcription Elongation, Chromatin Structure, and Genome Stability in Saccharomyces cerevisiae. Mol. Cell. Biol. 26(4), 1496-1509.
2005Guillemette, B.*, Bataille, A.*, Gévry, N., Adam, M., Blanchette, Robert, F$. and Gaudreau, L$. (2005) Variant Histone H2A.Z is Globally Localized to the Promoters of Inactive Yeast Genes and Regulates Nucleosome Positioning. PLoS Biology 3(12), e384.Laganière, J., Deblois, G., Lefebvre, C., Bataille, A.R., Robert, F. and Giguère, V. (2005) Location Analysis of Estrogen Receptor alpha Target Promoters Reveals that FOXA1 Defines a Domain of the Estrogen Response. Proc. Natl. Acad. Sci. USA 102, 11651-11656.
avant 2005Robert, F.*, Pokholok, D.K.*, Hannett, N.M., Rinaldi, N.J., Chandy, M., Rolfe, A., Workman, J.L., Gifford, D.K., Young, R.A. (2004) Global Position and Recruitment of HATs and HDACs in the Yeast Genome. Mol Cell 16, 199-209.Bar-Joseph, Z., Gerber, G.K., Rinaldi, N.J., Lee, T.I., Harbison, C.T., Robert, F., Gordon, D.B., Fraenkel, E., Simon, I., Jaakkola, T.S., Young, R.A. and Gifford, D.K. (2003) Computational discovery of gene modules and regulatory networks. Nature Biotechnology 21, 1337-1342.Ng, H.H.*, Robert, F.*, Young, R., A. and Struhl, K (2003) Localized marking of active Pol II genes targeted recruitment of Set1 histone methylase provides a memory of recent transcriptional activity. Mol Cell 11, 709-19.Lee, T. I.*, Rinaldi, N.J.*, Robert, F.*, Odom, D.T., Bar-Joseph, Z., Gerber, G.K., Hannett, N.M., Harbison, C.T., Thompson, C.M., Simon, I., Zeitlinger, J., Jennings, E.G., Murray, H.L., Gordon, D.B., Ren, B., Wyrick, J.J., Tagne, J-B, Volkert, T.L., Fraenkel, E., Gifford, D.K., Young, R.A. (2002) Transcriptional Regulatory Networks in Saccharomyces cerevisiae. Science 298, 799-804.Ng, H.H.*, Robert, F.*, Young, R., A. and Struhl, K (2002) Genome-wide Location and Regulated Recruitment of the RSC nucleosome-remodeling complex. Genes Dev. 16, 806-819.Robert, F., Blanchette, M., Maes, O., Chabot, B. and Coulombe, B. (2002) A human RNA polymerase II-containing complex associated with factors necessary for spliceosome assembly. J. Biol. Chem. 277, 9302-9306.Adam, M.*, Robert, F.*, Larochelle, M.* and Gaudreau, L. (2001) H2A.Z is Required for Global Chromatin Integrity and for Recruitment of RNA Polymerase II under Specific Conditions. Mol. Cell. Biol. 21, 6270-6279.Ren, B.*, Robert, F.*, Wyrick, J. J.*, Aparicio, O., Jennings, E. G., Simon, I., Zeitlinger, J., Schreiber, J., Hannett, N., Kanin, E., Volkert, T. L., Wilson, C. J., Bell, S. P. and Young, R. A. (2000) Genome-wide Location and Function of DNA Binding Proteins. Science, 290, 2306-2309.Robert, F. and Coulombe, B. Methods in Molecular Biology 2nd edition: The use of site-specific protein-DNA photo-crosslinking to analyse the molecular organization of the RNA polymerase II initiation complex (Hunana Press, Totowa, NJ, USA).
Robert, F., Douziech, M., Forget, D., Elgy, J-M., Greenblatt, J., Burton, Z. F. and Coulombe, B. (1998) Wrapping of Promoter DNA around the RNA Polymerase II Initiation Complex Induced by TFIIF. Mol. Cell 2, 341-351.Forget, D., Robert, F., Grondin, G., Burton, Z. F., Greenblatt, J. and Coulombe, B. (1997) RAP74 Induces Promoter Contacts by RNA Polymerase II Upstream and Downstream of a DNA Bend Centered on the TATA box. Proc. Natl. Acad. Sci. USA 94, 7150-7155.Robert, F., Forget, D., Li, J., Greenblatt, J. and Coulombe, B. (1996) Localization of Subunits of Transcription Factors IIE and IIF Immediately Upstream of the Transcription Initiation Site of the Adenovirus Major Late Promoter. J. Biol. Chem. 271(5), 8517-8520.
